Per-class MapBiomas composition table (every class) for an assessment
Source:R/classes.R
class_table.RdReturns, for each species, the area and percentage of every MapBiomas
class found inside the EOO and/or the AOO. This complements the headline
natural-versus-converted summary in assess_species with the full
class-by-class breakdown.
Usage
class_table(assessment, species = NULL, range = c("both", "eoo", "aoo"))Arguments
- assessment
A
geoconv_assessmentfromassess_species(run withmapbiomas = TRUE).- species
Optional species name (or vector).
NULL(default) uses all assessed species.- range
"both"(default),"eoo"or"aoo".
Value
A long data.frame with columns species, range
("EOO"/"AOO"), code, class_pt, class_en,
group, area_km2 and pct (percentage of the mapped area
within that range). Empty (with a warning) if MapBiomas was not computed.
Examples
# \donttest{
occ <- read_occurrences(system.file("extdata", "example_occurrences.csv",
package = "mappingAS"))
# reads MapBiomas (one year; the multi-year habitat trend is skipped)
res <- assess_species(occ, year = 2024, infer_decline_from_habitat = FALSE,
verbose = FALSE)
class_table(res)
#> species range code class_pt
#> 1 Prepusa connata Gardner AOO 3 Formacao Florestal
#> 2 Prepusa connata Gardner AOO 15 Pastagem
#> 3 Prepusa connata Gardner AOO 21 Mosaico de Usos
#> 4 Prepusa connata Gardner AOO 12 Formacao Campestre
#> 5 Prepusa connata Gardner AOO 9 Silvicultura
#> 6 Prepusa connata Gardner AOO 33 Rio, Lago e Oceano
#> 7 Prepusa connata Gardner AOO 29 Afloramento Rochoso
#> 8 Prepusa connata Gardner EOO 3 Formacao Florestal
#> 9 Prepusa connata Gardner EOO 21 Mosaico de Usos
#> 10 Prepusa connata Gardner EOO 15 Pastagem
#> 11 Prepusa connata Gardner EOO 12 Formacao Campestre
#> 12 Prepusa connata Gardner EOO 24 Area Urbanizada
#> 13 Prepusa connata Gardner EOO 9 Silvicultura
#> 14 Prepusa connata Gardner EOO 33 Rio, Lago e Oceano
#> 15 Prepusa connata Gardner EOO 25 Outras Areas nao Vegetadas
#> 16 Prepusa connata Gardner EOO 11 Campo Alagado e Area Pantanosa
#> 17 Prepusa connata Gardner EOO 29 Afloramento Rochoso
#> 18 Prepusa connata Gardner EOO 41 Outras Lavouras Temporarias
#> 19 Prepusa connata Gardner EOO 39 Soja
#> 20 Prepusa connata Gardner EOO 30 Mineracao
#> 21 Prepusa connata Gardner EOO 32 Apicum
#> 22 Prepusa connata Gardner EOO 4 Formacao Savanica
#> 23 Prepusa hookeriana Gardner AOO 3 Formacao Florestal
#> 24 Prepusa hookeriana Gardner AOO 21 Mosaico de Usos
#> 25 Prepusa hookeriana Gardner AOO 24 Area Urbanizada
#> 26 Prepusa hookeriana Gardner AOO 12 Formacao Campestre
#> 27 Prepusa hookeriana Gardner AOO 15 Pastagem
#> 28 Prepusa hookeriana Gardner AOO 29 Afloramento Rochoso
#> 29 Prepusa hookeriana Gardner AOO 33 Rio, Lago e Oceano
#> 30 Prepusa hookeriana Gardner AOO 9 Silvicultura
#> 31 Prepusa hookeriana Gardner AOO 25 Outras Areas nao Vegetadas
#> 32 Prepusa hookeriana Gardner AOO 32 Apicum
#> 33 Prepusa hookeriana Gardner EOO 3 Formacao Florestal
#> 34 Prepusa hookeriana Gardner EOO 21 Mosaico de Usos
#> 35 Prepusa hookeriana Gardner EOO 15 Pastagem
#> 36 Prepusa hookeriana Gardner EOO 12 Formacao Campestre
#> 37 Prepusa hookeriana Gardner EOO 24 Area Urbanizada
#> 38 Prepusa hookeriana Gardner EOO 9 Silvicultura
#> 39 Prepusa hookeriana Gardner EOO 25 Outras Areas nao Vegetadas
#> 40 Prepusa hookeriana Gardner EOO 33 Rio, Lago e Oceano
#> 41 Prepusa hookeriana Gardner EOO 11 Campo Alagado e Area Pantanosa
#> 42 Prepusa hookeriana Gardner EOO 29 Afloramento Rochoso
#> 43 Prepusa hookeriana Gardner EOO 41 Outras Lavouras Temporarias
#> 44 Prepusa hookeriana Gardner EOO 39 Soja
#> 45 Prepusa hookeriana Gardner EOO 30 Mineracao
#> 46 Prepusa hookeriana Gardner EOO 32 Apicum
#> 47 Prepusa hookeriana Gardner EOO 4 Formacao Savanica
#> 48 Worsleya procera (Lem.) Traub AOO 3 Formacao Florestal
#> 49 Worsleya procera (Lem.) Traub AOO 21 Mosaico de Usos
#> 50 Worsleya procera (Lem.) Traub AOO 15 Pastagem
#> 51 Worsleya procera (Lem.) Traub AOO 12 Formacao Campestre
#> 52 Worsleya procera (Lem.) Traub EOO 12 Formacao Campestre
#> 53 Worsleya procera (Lem.) Traub EOO 21 Mosaico de Usos
#> class_en group area_km2 pct
#> 1 Forest Formation natural 8.0841 49.22
#> 2 Pasture anthropic 3.9554 24.08
#> 3 Mosaic of Uses anthropic 3.4068 20.74
#> 4 Grassland natural 0.9241 5.63
#> 5 Forest Plantation anthropic 0.0324 0.20
#> 6 River, Lake and Ocean water 0.0157 0.10
#> 7 Rocky Outcrop natural 0.0075 0.05
#> 8 Forest Formation natural 1310.1092 53.13
#> 9 Mosaic of Uses anthropic 587.9621 23.84
#> 10 Pasture anthropic 443.1769 17.97
#> 11 Grassland natural 58.6202 2.38
#> 12 Urban Area anthropic 45.2100 1.83
#> 13 Forest Plantation anthropic 13.7537 0.56
#> 14 River, Lake and Ocean water 2.6326 0.11
#> 15 Other non Vegetated Areas other 2.3218 0.09
#> 16 Wetland natural 0.7386 0.03
#> 17 Rocky Outcrop natural 0.6735 0.03
#> 18 Other Temporary Crops anthropic 0.2317 0.01
#> 19 Soybean anthropic 0.2292 0.01
#> 20 Mining anthropic 0.0928 0.00
#> 21 Hypersaline Tidal Flat natural 0.0464 0.00
#> 22 Savanna Formation natural 0.0008 0.00
#> 23 Forest Formation natural 31.7461 59.37
#> 24 Mosaic of Uses anthropic 9.1545 17.12
#> 25 Urban Area anthropic 6.3550 11.88
#> 26 Grassland natural 3.7249 6.97
#> 27 Pasture anthropic 1.9575 3.66
#> 28 Rocky Outcrop natural 0.2526 0.47
#> 29 River, Lake and Ocean water 0.1210 0.23
#> 30 Forest Plantation anthropic 0.0714 0.13
#> 31 Other non Vegetated Areas other 0.0695 0.13
#> 32 Hypersaline Tidal Flat natural 0.0215 0.04
#> 33 Forest Formation natural 1191.5279 57.25
#> 34 Mosaic of Uses anthropic 468.3845 22.51
#> 35 Pasture anthropic 317.5282 15.26
#> 36 Grassland natural 46.5826 2.24
#> 37 Urban Area anthropic 39.2056 1.88
#> 38 Forest Plantation anthropic 12.4421 0.60
#> 39 Other non Vegetated Areas other 1.7030 0.08
#> 40 River, Lake and Ocean water 1.5466 0.07
#> 41 Wetland natural 0.7871 0.04
#> 42 Rocky Outcrop natural 0.7115 0.03
#> 43 Other Temporary Crops anthropic 0.3658 0.02
#> 44 Soybean anthropic 0.2706 0.01
#> 45 Mining anthropic 0.0928 0.00
#> 46 Hypersaline Tidal Flat natural 0.0588 0.00
#> 47 Savanna Formation natural 0.0008 0.00
#> 48 Forest Formation natural 1.9004 46.23
#> 49 Mosaic of Uses anthropic 1.0947 26.63
#> 50 Pasture anthropic 0.5714 13.90
#> 51 Grassland natural 0.5440 13.23
#> 52 Grassland natural 0.0041 62.50
#> 53 Mosaic of Uses anthropic 0.0025 37.50
# }